Publications

Journal Publications

  1. Christian Marzahl, Marc Aubreville, Christof A. Bertram, Jennifer Maier, Christian Bergler, Christine Kröger, Jörn Voigt, Katharina Breininger, Robert Klopfleisch, Andreas Maier:
    EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control[filelinkend]
    In: Scientific Reports 11 (2021)

  2. Marc Aubreville, Christof A. Bertram, Taryn A. Donovan, Christian Marzahl, Andreas Maier, Robert Klopfleisch:
    A completely annotated whole slide image dataset of canine breast cancer to aid human breast cancer research[filelinkend]
    In: Scientific Data 7 417 (2020)

  3. Marc Aubreville, Christof A. Bertram, Christian Marzahl, Corinne Gurtner, Martina Dettwiler, Anja Schmidt, Florian Bartenschlager, Sophie Merz, Marco Fragoso, Olivia Kershaw, Robert Klopfleisch, Andreas Maier:
    s41598-020-73246-21.pdfDeep learning algorithms out-perform veterinary pathologists in detecting the mitotically most active tumor region[filelinkend]
    In: Scientific Reports 10 (2020)

  4. Christof A. Bertram, Marc Aubreville, Corinne Gurtner, Alexander Bartel, Sarah M. Corner, Martina Dettwiler, Olivia Kershaw, Erica L. Noland, Anja Schmidt, Dodd G. Sledge, Rebecca C. Smedley, Tuddow Thaiwong, Matti Kiupel, Andreas Maier, Robert Klopfleisch:
    Computerized Calculation of Mitotic Count Distribution in Canine Cutaneous Mast Cell Tumor Sections: Mitotic Count Is Area Dependent[filelinkend]
    In: Veterinary Pathology 57 2 (2019)

  5. Christof A. Bertram, Marc Aubreville, Christian Marzahl, Andreas Maier, Robert Klopfleisch:
    s41597-019-0290-4.pdfA large-scale dataset for mitotic figure assessment on whole slide images of canine cutaneous mast cell tumor[filelinkend]
    In: Scientific Data 6 274 (2019)

  6. Miguel Goncalves, Marc Aubreville, Sarina K. Mueller, Matti Sievert, Andreas Maier, Heinrich Iro, Christopher Bohr:
    Probe-based confocal laser endomicroscopy in detecting malignant lesions of vocal folds[filelinkend]
    In: Acta Otorhinolaryngologica Italica 39 6 (2019)

  7. Marc Aubreville, Christian Knipfer, Nicolai Oetter, Christian Jaremenko, Erik Rodner, Joachim Denzler, Christopher Bohr, Helmut Neumann, Florian Stelzle, Andreas Maier:
    s41598-017-12320-8.pdfAutomatic Classification of Cancerous Tissue in Laserendomicroscopy Images of the Oral Cavity using Deep Learning[filelinkend]
    In: Scientific Reports 7 (2017)

  8. Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H.J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Adam Shephard, Jakob Dexl:
    Mitosis domain generalization in histopathology images - The MIDOG challenge[filelinkend]
    In: Medical Image Analysis 84 (2023)

Conferences

  1. Marc Aubreville:
    Quantifying the Scanner-Induced Domain Gap in Mitosis Detection[filelinkend]
    In: MIDL 2021 (2021)
    DOI: 2103.16515

  2. Frauke Wilm, Christof A. Bertram, Christian Marzahl, Alexander Barthel, Taryn A. Donovan, Charles-Antoine Assenmacher, Kathrin Becker, Mark Bennett, Sarah Corner, Brieuc Cossic, Daniela Denk, Martina Dettwiler, Beatriz Garcia-Gonzalez, Corinne Gurtner, Annika Lehmbecker, Sophie Merz, Stephanie Plog, Anja Schmidt, Rebecca C. Smedley, Marco Tecilla, Tuddow Thaiwong, Katharina Breininger, Matti Kiupel, Andreas Maier, Robert Klopfleisch, Marc Aubreville:
    How Many Annotators Do We Need? - A Study on the Influence of Inter-Observer Variability on the Reliability of Automatic Mitotic Figure Assessment[filelinkend]
    In: Bildverarbeitung für die Medizin 2021 (2021)

  3. Christof A. Bertram, Taryn A. Donovan, Marco Tecilla, Florian Bartenschlager, Marco Fragoso, Frauke Wilm, Christian Marzahl, Katharina Breininger, Andreas Maier, Robert Klopfleisch, Marc Aubreville:
    Dataset on Bi- and Multi-nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors[filelinkend]
    In: Bildverarbeitung für die Medizin 2021 (2021)

  4. Christian Marzahl, Christof A. Bertram, Frauke Wilm, Jörn Voigt, Ann K. Barton, Robert Klopfleisch, Katharina Breininger, Andreas Maier, Marc Aubreville:
    Cell Detection for Asthma on Partially Annotated Whole Slide Images[filelinkend]
    In: Bildverarbeitung für die Medizin 2021 (2021)

  5. Christof A. Bertram, Mitko Veta, Christian Marzahl, Nikolas Stathonikos, Andreas Maier, Robert Klopfleisch, Marc Aubreville:
    Are Pathologist-Defined Labels Reproducible? Comparison of the TUPAC16 Mitotic Figure Dataset with an Alternative Set of Labels[filelinkend]
    In: IMIMIC 2020, MIL3ID 2020, LABELS 2020 (2020)

  6. Christof A. Bertram, Marc Aubreville, Christian Marzahl, Andreas Maier, Robert Klopfleisch:
    Abstract: How Big is Big Enough? A Large-Scale Histological Dataset of Mitotic Figures[filelinkend]
    In: Bildverarbeitung für die Medizin 2020 (2020)

  7. Christian Marzahl, Marc Aubreville, Christof A. Bertram, Stefan Gerlach, Jennifer Maier, Jörn Voigt, Jenny Hill, Robert Klopfleisch, Andreas Maier:
    Is Crowd-Algorithm Collaboration an Advanced Alternative to Crowd-Sourcing on Cytology Slides?[filelinkend]
    In: Bildverarbeitung für die Medizin 2020 (2020)

  8. Marc Aubreville, K. Ehrensperger, A. Maier, T. Rosenkranz, B. Graf, H. Puder:
    Deep Denoising for Hearing Aid Applications[filelinkend]
    In: 2018 16th International Workshop on Acoustic Signal Enhancement (IWAENC) (2018)

  9. Marc Aubreville, Miguel Goncalves, Christian Knipfer, Nicolai Oetter, Tobias Würfl, Helmut Neumann, Florian Stelzle, Christopher Bohr, Andreas Maier:
    Patch-based Carcinoma Detection on Confocal Laser Endomicroscopy Images - A Cross-site Robustness Assessment[filelinkend]
    In: Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018) (2018)